Index

A

activate_snapshot_callback (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1]

AM_HLLC (in module jf1uids.option_classes.simulation_config)

B

BACKWARDS (in module jf1uids.option_classes.simulation_config) boundary_settings (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1]

BoundarySettings (class in jf1uids.option_classes.simulation_config), [1] BoundarySettings1D (class in jf1uids.option_classes.simulation_config), [1] box_size (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1]

C

C_cfl (jf1uids.option_classes.simulation_params.SimulationParams attribute), [1] calculate_gravitational_energy() (in module jf1uids.fluid_equations.total_quantities), [1] calculate_internal_energy() (in module jf1uids.fluid_equations.total_quantities), [1] calculate_kinetic_energy() (in module jf1uids.fluid_equations.total_quantities), [1] calculate_radial_momentum() (in module jf1uids.fluid_equations.total_quantities), [1] calculate_shell_profiles() (jf1uids._physics_modules._stellar_wind.weaver.Weaver method) calculate_total_energy() (in module jf1uids.fluid_equations.total_quantities), [1] calculate_total_mass() (in module jf1uids.fluid_equations.total_quantities), [1] CARTESIAN (in module jf1uids.option_classes.simulation_config) cell_volumes (jf1uids.data_classes.simulation_helper_data.HelperData attribute), [1] cnn_mhd_corrector_config (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] cnn_mhd_corrector_params (jf1uids.option_classes.simulation_params.SimulationParams attribute), [1] CodeUnits (class in jf1uids.units.unit_helpers), [1] conserved_state_from_primitive() (in module jf1uids.fluid_equations.fluid), [1]

construct_primitive_state() (in module jf1uids.initial_condition_generation.construct_primitive_state), [1] cooling_config (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] cooling_params (jf1uids.option_classes.simulation_params.SimulationParams attribute), [1] cosmic_ray_config (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] cosmic_ray_n_active (jf1uids.fluid_equations.registered_variables.RegisteredVariables attribute), [1] cosmic_ray_n_index (jf1uids.fluid_equations.registered_variables.RegisteredVariables attribute), [1] cosmic_ray_params (jf1uids.option_classes.simulation_params.SimulationParams attribute), [1] cosmic_rays (jf1uids._physics_modules._cosmic_rays.cosmic_ray_options.CosmicRayConfig attribute) CosmicRayConfig (class in jf1uids._physics_modules._cosmic_rays.cosmic_ray_options) CosmicRayParams (class in jf1uids._physics_modules._cosmic_rays.cosmic_ray_options) create_turb_field() (in module jf1uids.initial_condition_generation.turbulent_ic_generator), [1] current_checkpoint (jf1uids.data_classes.simulation_snapshot_data.SnapshotData attribute), [1] custom_roll() (in module jf1uids._stencil_operations._stencil_operations) CYLINDRICAL (in module jf1uids.option_classes.simulation_config)

D

density_index (jf1uids.fluid_equations.registered_variables.RegisteredVariables attribute), [1] differentiation_mode (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] diffusive_shock_acceleration (jf1uids._physics_modules._cosmic_rays.cosmic_ray_options.CosmicRayConfig attribute) diffusive_shock_acceleration_efficiency (jf1uids._physics_modules._cosmic_rays.cosmic_ray_options.CosmicRayParams attribute) diffusive_shock_acceleration_start_time (jf1uids._physics_modules._cosmic_rays.cosmic_ray_options.CosmicRayParams attribute)

dimensionality (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] DONOR_ACCOUNTING (in module jf1uids.option_classes.simulation_config) DOUBLE_MINMOD (in module jf1uids.option_classes.simulation_config) dt_max (jf1uids.option_classes.simulation_params.SimulationParams attribute), [1] dummy_multi_star_wind() (in module jf1uids._physics_modules._stellar_wind.stellar_wind)

E

EI (in module jf1uids._physics_modules._stellar_wind.stellar_wind_options)

exact_end_time (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1]

F

FIELD_TYPE (in module jf1uids.option_classes.simulation_config) final_state (jf1uids.data_classes.simulation_snapshot_data.SnapshotData attribute), [1] finalize_config() (in module jf1uids.option_classes.simulation_config), [1]

find_shock_zone() (in module jf1uids.shock_finder.shock_finder), [1] first_order_fallback (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] fixed_timestep (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] FORWARDS (in module jf1uids.option_classes.simulation_config)

G

gamma (jf1uids.option_classes.simulation_params.SimulationParams attribute), [1] gamma_cr (in module jf1uids._physics_modules._cosmic_rays.cr_fluid_equations) gamma_gas (in module jf1uids._physics_modules._cosmic_rays.cr_fluid_equations) gas_pressure_from_primitives_with_crs() (in module jf1uids._physics_modules._cosmic_rays.cr_fluid_equations) GAS_STATE (in module jf1uids.option_classes.simulation_config) geometric_centers (jf1uids.data_classes.simulation_helper_data.HelperData attribute), [1] geometry (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] get_absolute_velocity() (in module jf1uids.fluid_equations.fluid), [1] get_critical_radius() (jf1uids._physics_modules._stellar_wind.weaver.Weaver method) get_density_profile() (jf1uids._physics_modules._stellar_wind.weaver.Weaver method) get_helper_data() (in module jf1uids.data_classes.simulation_helper_data), [1] get_inner_shock_radius() (jf1uids._physics_modules._stellar_wind.weaver.Weaver method)

get_outer_shock_radius() (jf1uids._physics_modules._stellar_wind.weaver.Weaver method) get_pressure_profile() (jf1uids._physics_modules._stellar_wind.weaver.Weaver method) get_radial_range_free_wind() (jf1uids._physics_modules._stellar_wind.weaver.Weaver method) get_radial_range_undisturbed_ism() (jf1uids._physics_modules._stellar_wind.weaver.Weaver method) get_radial_range_wind_interior() (jf1uids._physics_modules._stellar_wind.weaver.Weaver method) get_registered_variables() (in module jf1uids.fluid_equations.registered_variables), [1] get_temperature_from_internal_energy() (jf1uids.units.unit_helpers.CodeUnits method), [1] get_velocity_profile() (jf1uids._physics_modules._stellar_wind.weaver.Weaver method) get_wave_speeds() (in module jf1uids.time_stepping._timestep_estimator) gravitational_constant (jf1uids.option_classes.simulation_params.SimulationParams attribute), [1] gravitational_energy (jf1uids.data_classes.simulation_snapshot_data.SnapshotData attribute), [1] grid_spacing (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1]

H

HelperData (class in jf1uids.data_classes.simulation_helper_data), [1] HLL (in module jf1uids.option_classes.simulation_config)

HLLC (in module jf1uids.option_classes.simulation_config) HLLC_LM (in module jf1uids.option_classes.simulation_config) HYBRID_HLLC (in module jf1uids.option_classes.simulation_config)

I

init_from_unit_params() (jf1uids.units.unit_helpers.CodeUnits method), [1] inject_crs_at_strongest_shock() (in module jf1uids._physics_modules._cosmic_rays.cr_injection)

inner_cell_boundaries (jf1uids.data_classes.simulation_helper_data.HelperData attribute), [1] internal_energy (jf1uids.data_classes.simulation_snapshot_data.SnapshotData attribute), [1] internal_energy_from_energy() (in module jf1uids.fluid_equations.fluid), [1]

J

jf1uids module, [1] jf1uids._geometry module jf1uids._geometry.boundaries module jf1uids._geometry.geometric_terms module jf1uids._geometry.geometry module jf1uids._physics_modules module jf1uids._physics_modules._cosmic_rays module jf1uids._physics_modules._cosmic_rays.cosmic_ray_options module jf1uids._physics_modules._cosmic_rays.cr_fluid_equations module jf1uids._physics_modules._cosmic_rays.cr_injection module jf1uids._physics_modules._stellar_wind module jf1uids._physics_modules._stellar_wind.stellar_wind module jf1uids._physics_modules._stellar_wind.stellar_wind_options module jf1uids._physics_modules._stellar_wind.weaver module jf1uids._physics_modules.run_physics_modules module jf1uids._riemann_solver module jf1uids._riemann_solver._lax_friedrichs module jf1uids._riemann_solver._riemann_solver module jf1uids._riemann_solver.hll module jf1uids._state_evolution module jf1uids._state_evolution.evolve_state module jf1uids._state_evolution.limited_gradients module jf1uids._state_evolution.limiters module jf1uids._state_evolution.reconstruction module jf1uids._stencil_operations module

jf1uids._stencil_operations._stencil_operations module jf1uids.data_classes module, [1] jf1uids.data_classes.simulation_helper_data module, [1] jf1uids.data_classes.simulation_snapshot_data module, [1] jf1uids.data_classes.simulation_state_struct module, [1] jf1uids.fluid_equations module, [1] jf1uids.fluid_equations.euler module, [1] jf1uids.fluid_equations.fluid module, [1] jf1uids.fluid_equations.registered_variables module, [1] jf1uids.fluid_equations.total_quantities module, [1] jf1uids.initial_condition_generation module, [1] jf1uids.initial_condition_generation.construct_primitive_state module, [1] jf1uids.initial_condition_generation.turbulent_ic_generator module, [1] jf1uids.option_classes module, [1] jf1uids.option_classes.simulation_config module, [1] jf1uids.option_classes.simulation_params module, [1] jf1uids.shock_finder module, [1] jf1uids.shock_finder.shock_finder module, [1] jf1uids.time_stepping module, [1] jf1uids.time_stepping._progress_bar module jf1uids.time_stepping._timestep_estimator module jf1uids.time_stepping._utils module jf1uids.time_stepping.time_integration module, [1] jf1uids.units module, [1] jf1uids.units.unit_helpers module, [1]

K

kinetic_energy (jf1uids.data_classes.simulation_snapshot_data.SnapshotData attribute), [1]

L

LAX_FRIEDRICHS (in module jf1uids.option_classes.simulation_config)

left_boundary (jf1uids.option_classes.simulation_config.BoundarySettings1D attribute), [1] limiter (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1]

M

MAGNETIC_FIELD_ONLY (in module jf1uids.option_classes.simulation_config) magnetic_index (jf1uids.fluid_equations.registered_variables.RegisteredVariables attribute), [1] MEI (in module jf1uids._physics_modules._stellar_wind.stellar_wind_options) memory_analysis (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] MEO (in module jf1uids._physics_modules._stellar_wind.stellar_wind_options) mhd (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] MHD_JET_BOUNDARY (in module jf1uids.option_classes.simulation_config) MINMOD (in module jf1uids.option_classes.simulation_config) module jf1uids, [1] jf1uids._geometry jf1uids._geometry.boundaries jf1uids._geometry.geometric_terms jf1uids._geometry.geometry jf1uids._physics_modules jf1uids._physics_modules._cosmic_rays jf1uids._physics_modules._cosmic_rays.cosmic_ray_options jf1uids._physics_modules._cosmic_rays.cr_fluid_equations jf1uids._physics_modules._cosmic_rays.cr_injection jf1uids._physics_modules._stellar_wind jf1uids._physics_modules._stellar_wind.stellar_wind jf1uids._physics_modules._stellar_wind.stellar_wind_options jf1uids._physics_modules._stellar_wind.weaver jf1uids._physics_modules.run_physics_modules jf1uids._riemann_solver jf1uids._riemann_solver._lax_friedrichs jf1uids._riemann_solver._riemann_solver jf1uids._riemann_solver.hll jf1uids._state_evolution jf1uids._state_evolution.evolve_state jf1uids._state_evolution.limited_gradients jf1uids._state_evolution.limiters jf1uids._state_evolution.reconstruction jf1uids._stencil_operations jf1uids._stencil_operations._stencil_operations jf1uids.data_classes, [1] jf1uids.data_classes.simulation_helper_data, [1] jf1uids.data_classes.simulation_snapshot_data, [1] jf1uids.data_classes.simulation_state_struct, [1] jf1uids.fluid_equations, [1] jf1uids.fluid_equations.euler, [1] jf1uids.fluid_equations.fluid, [1] jf1uids.fluid_equations.registered_variables, [1] jf1uids.fluid_equations.total_quantities, [1] jf1uids.initial_condition_generation, [1] jf1uids.initial_condition_generation.construct_primitive_state, [1] jf1uids.initial_condition_generation.turbulent_ic_generator, [1] jf1uids.option_classes, [1] jf1uids.option_classes.simulation_config, [1] jf1uids.option_classes.simulation_params, [1] jf1uids.shock_finder, [1] jf1uids.shock_finder.shock_finder, [1] jf1uids.time_stepping, [1] jf1uids.time_stepping._progress_bar jf1uids.time_stepping._timestep_estimator jf1uids.time_stepping._utils jf1uids.time_stepping.time_integration, [1] jf1uids.units, [1] jf1uids.units.unit_helpers, [1]

MUSCL (in module jf1uids.option_classes.simulation_config)

N

neural_net_force_config (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] neural_net_force_params (jf1uids.option_classes.simulation_params.SimulationParams attribute), [1] num_cells (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] num_checkpoints (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] num_ghost_cells (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1]

num_injection_cells (jf1uids._physics_modules._stellar_wind.stellar_wind_options.WindConfig attribute) num_iterations (jf1uids.data_classes.simulation_snapshot_data.SnapshotData attribute), [1] num_snapshots (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] num_timesteps (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] num_vars (jf1uids.fluid_equations.registered_variables.RegisteredVariables attribute), [1]

O

OPEN_BOUNDARY (in module jf1uids.option_classes.simulation_config)

OSHER (in module jf1uids.option_classes.simulation_config) outer_cell_boundaries (jf1uids.data_classes.simulation_helper_data.HelperData attribute), [1]

P

PERIODIC_BOUNDARY (in module jf1uids.option_classes.simulation_config) pressure_floor (jf1uids._physics_modules._stellar_wind.stellar_wind_options.WindParams attribute) pressure_from_energy() (in module jf1uids.fluid_equations.fluid), [1] pressure_from_internal_energy() (in module jf1uids.fluid_equations.fluid), [1] pressure_index (jf1uids.fluid_equations.registered_variables.RegisteredVariables attribute), [1]

primitive_state (jf1uids.data_classes.simulation_state_struct.StateStruct attribute), [1] primitive_state_from_conserved() (in module jf1uids.fluid_equations.fluid), [1] print_elapsed_time (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] print_simulation_parameters() (jf1uids.units.unit_helpers.CodeUnits method), [1] progress_bar (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1]

R

r (jf1uids.data_classes.simulation_helper_data.HelperData attribute), [1] r_hat_alpha (jf1uids.data_classes.simulation_helper_data.HelperData attribute), [1] radial_momentum (jf1uids.data_classes.simulation_snapshot_data.SnapshotData attribute), [1] reconstruction_order (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] REFLECTIVE_BOUNDARY (in module jf1uids.option_classes.simulation_config) RegisteredVariables (class in jf1uids.fluid_equations.registered_variables), [1] return_final_state (jf1uids.option_classes.simulation_config.SnapshotSettings attribute), [1] return_gravitational_energy (jf1uids.option_classes.simulation_config.SnapshotSettings attribute), [1] return_internal_energy (jf1uids.option_classes.simulation_config.SnapshotSettings attribute), [1] return_kinetic_energy (jf1uids.option_classes.simulation_config.SnapshotSettings attribute), [1] return_radial_momentum (jf1uids.option_classes.simulation_config.SnapshotSettings attribute), [1]

return_snapshots (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] return_states (jf1uids.option_classes.simulation_config.SnapshotSettings attribute), [1] return_total_energy (jf1uids.option_classes.simulation_config.SnapshotSettings attribute), [1] return_total_mass (jf1uids.option_classes.simulation_config.SnapshotSettings attribute), [1] riemann_solver (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] RIEMANN_SPLIT (in module jf1uids.option_classes.simulation_config) RIEMANN_SPLIT_UNSTABLE (in module jf1uids.option_classes.simulation_config) right_boundary (jf1uids.option_classes.simulation_config.BoundarySettings1D attribute), [1] RK2_SSP (in module jf1uids.option_classes.simulation_config) runtime (jf1uids.data_classes.simulation_snapshot_data.SnapshotData attribute), [1] runtime_debugging (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1]

S

self_gravity (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] self_gravity_version (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] shock_criteria() (in module jf1uids.shock_finder.shock_finder), [1] shock_sensor() (in module jf1uids.shock_finder.shock_finder), [1] SIMPLE_SOURCE_TERM (in module jf1uids.option_classes.simulation_config) SimulationConfig (class in jf1uids.option_classes.simulation_config), [1] SimulationParams (class in jf1uids.option_classes.simulation_params), [1] snapshot_settings (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] snapshot_timepoints (jf1uids.option_classes.simulation_params.SimulationParams attribute), [1] SnapshotData (class in jf1uids.data_classes.simulation_snapshot_data), [1] SnapshotSettings (class in jf1uids.option_classes.simulation_config), [1] source_term_aware_timestep (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1]

speed_of_sound() (in module jf1uids.fluid_equations.fluid), [1] speed_of_sound_crs() (in module jf1uids._physics_modules._cosmic_rays.cr_fluid_equations) SPHERICAL (in module jf1uids.option_classes.simulation_config) SPLIT (in module jf1uids.option_classes.simulation_config) split (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] state_struct (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] STATE_TYPE (in module jf1uids.option_classes.simulation_config) STATE_TYPE_ALTERED (in module jf1uids.option_classes.simulation_config) states (jf1uids.data_classes.simulation_snapshot_data.SnapshotData attribute), [1] StateStruct (class in jf1uids.data_classes.simulation_state_struct), [1] StaticIntVector (class in jf1uids.fluid_equations.registered_variables), [1] stellar_wind (jf1uids._physics_modules._stellar_wind.stellar_wind_options.WindConfig attribute) SUPERBEE (in module jf1uids.option_classes.simulation_config)

T

t_end (jf1uids.option_classes.simulation_params.SimulationParams attribute), [1] time_integration() (in module jf1uids.time_stepping.time_integration), [1] time_integrator (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] time_points (jf1uids.data_classes.simulation_snapshot_data.SnapshotData attribute), [1] total_energy (jf1uids.data_classes.simulation_snapshot_data.SnapshotData attribute), [1]

total_energy_from_primitives() (in module jf1uids.fluid_equations.fluid), [1] total_energy_from_primitives_with_crs() (in module jf1uids._physics_modules._cosmic_rays.cr_fluid_equations) total_mass (jf1uids.data_classes.simulation_snapshot_data.SnapshotData attribute), [1] total_pressure_from_conserved_with_crs() (in module jf1uids._physics_modules._cosmic_rays.cr_fluid_equations) trace_wind_density (jf1uids._physics_modules._stellar_wind.stellar_wind_options.WindConfig attribute)

U

UNSPLIT (in module jf1uids.option_classes.simulation_config)

use_specific_snapshot_timepoints (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1]

V

VAN_ALBADA (in module jf1uids.option_classes.simulation_config) VAN_ALBADA_PP (in module jf1uids.option_classes.simulation_config) VARAXIS (in module jf1uids.option_classes.simulation_config)

velocity_index (jf1uids.fluid_equations.registered_variables.RegisteredVariables attribute), [1] VELOCITY_ONLY (in module jf1uids.option_classes.simulation_config) volumetric_centers (jf1uids.data_classes.simulation_helper_data.HelperData attribute), [1]

W

Weaver (class in jf1uids._physics_modules._stellar_wind.weaver) wind_config (jf1uids.option_classes.simulation_config.SimulationConfig attribute), [1] wind_density_active (jf1uids.fluid_equations.registered_variables.RegisteredVariables attribute), [1] wind_density_index (jf1uids.fluid_equations.registered_variables.RegisteredVariables attribute), [1] wind_final_velocity (jf1uids._physics_modules._stellar_wind.stellar_wind_options.WindParams attribute)

wind_injection_scheme (jf1uids._physics_modules._stellar_wind.stellar_wind_options.WindConfig attribute) wind_mass_loss_rate (jf1uids._physics_modules._stellar_wind.stellar_wind_options.WindParams attribute) wind_params (jf1uids.option_classes.simulation_params.SimulationParams attribute), [1] WindConfig (class in jf1uids._physics_modules._stellar_wind.stellar_wind_options) WindParams (class in jf1uids._physics_modules._stellar_wind.stellar_wind_options)

X

x (jf1uids.fluid_equations.registered_variables.StaticIntVector attribute), [1] (jf1uids.option_classes.simulation_config.BoundarySettings attribute), [1]

XAXIS (in module jf1uids.option_classes.simulation_config)

Y

y (jf1uids.fluid_equations.registered_variables.StaticIntVector attribute), [1] (jf1uids.option_classes.simulation_config.BoundarySettings attribute), [1]

YAXIS (in module jf1uids.option_classes.simulation_config)

Z

z (jf1uids.fluid_equations.registered_variables.StaticIntVector attribute), [1] (jf1uids.option_classes.simulation_config.BoundarySettings attribute), [1]

ZAXIS (in module jf1uids.option_classes.simulation_config)